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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
980
total RNA-seq
905
ChIP-seq
195
ATAC-seq
177
DNase-seq
74
single cell RNA-seq
27
WGBS
22
snATAC-seq
21
pCHi-C
16
small RNA-seq
14
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
RNA microarray
Assay category
1070
Transcription
905
DNA binding
398
DNA accessibility
38
DNA methylation
14
3D chromatin structure
Target of assay
626
histone modification
625
histone
322
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
461
February, 2021
284
August, 2017
240
October, 2019
August, 2021
193
May, 2020
162
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
36
March, 2020
26
November, 2018
24
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1903
bam
1769
bigWig
972
tsv
916
bed narrowPeak
560
bigBed narrowPeak
377
fastq
238
tagAlign
212
bed broadPeak
204
bed bed3+
175
bigBed broadPeak
25
bed bedMethyl
25
bigBed bedMethyl
16
txt
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2447
Homo sapiens
Biosample type
2455
tissue
1030
primary cell
529
cell line
237
in vitro differentiated cells
9
stem cell
Organ
545
connective tissue
503
pancreas
486
adipose tissue
361
liver
262
brain
221
heart
171
kidney
127
blood vessel
127
vasculature
121
limb
81
musculature of body
74
bone element
71
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
Project
2358
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1791
GRCh38
1750
hg19
Lab
2233
AMP-T2D consortium
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
organ_slims!
intestine
month_released!
August, 2021
BIOSAMPLE
ASSAY
2455 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
RNA microarray
tissue
islet of Langerhans
291
71
68
1
6
7
4
2
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
2
1
3
1
1
1
1
kidney
27
11
13
56
1
1
bone tissue
58
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