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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ATAC-seq
38
ChIP-seq
4
DNase-seq
1
pCHi-C
Assay category
Transcription
49
DNA accessibility
38
DNA binding
Target of assay
24
histone
24
histone modification
14
broad histone mark
10
narrow histone mark
9
control
5
transcription factor
1
RNA binding protein
Date released
35
February, 2023
30
October, 2019
14
February, 2021
5
May, 2019
2
June, 2019
1
July, 2019
1
March, 2020
Available data
74
bed narrowPeak
48
bam
31
bigWig
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
tsv
Organism
88
Homo sapiens
Biosample type
74
tissue
14
cell line
Organ
597
liver
424
pancreas
267
epithelium
260
brain
221
heart
209
kidney
186
connective tissue
168
vasculature
163
blood vessel
114
limb
89
adipose tissue
83
artery
78
musculature of body
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
22
vein
19
embryo
18
ureter
13
bone element
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
Project
88
AMP
Genome assembly (visualization)
74
GRCh38
39
hg19
Lab
88
AMP-T2D consortium
audit.ERROR.category!
inconsistent ontology term
assay_slims!
Transcription
BIOSAMPLE
ASSAY
88 results
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ATAC-seq
ChIP-seq
DNase-seq
pCHi-C
tissue
coronary artery
36
5
2
tibial artery
1
23
2
islet of Langerhans
4
ovary
1
cell line
smooth muscle cell of the coronary artery
8
6
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