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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
35
ChIP-seq
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
45
DNA accessibility
35
DNA binding
Target of assay
21
histone
21
histone modification
14
broad histone mark
9
control
7
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
25
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
Available data
98
bam
81
bigWig
70
bed narrowPeak
58
tsv
21
bigBed narrowPeak
6
tagAlign
Organism
138
Homo sapiens
Biosample type
70
tissue
66
cell line
2
primary cell
Organ
857
pancreas
784
liver
657
connective tissue
488
adipose tissue
415
epithelium
358
heart
251
brain
251
kidney
225
vasculature
221
blood vessel
137
artery
86
limb
75
bone element
69
blood
69
bodily fluid
57
eye
55
musculature of body
41
nerve
31
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
138
AMP
Genome assembly (visualization)
124
GRCh38
89
hg19
Lab
138
AMP-T2D consortium
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inconsistent ontology term
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
138 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
tissue
coronary artery
1
36
5
tibial artery
1
1
23
pulmonary artery
2
islet of Langerhans
1
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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