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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
total RNA-seq
52
ChIP-seq
45
ATAC-seq
4
DNase-seq
2
single cell RNA-seq
1
GRO-seq
Assay category
70
Transcription
52
DNA binding
49
DNA accessibility
Target of assay
30
histone
30
histone modification
18
broad histone mark
14
control
12
narrow histone mark
8
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
26
October, 2019
13
February, 2018
10
August, 2021
9
December, 2017
5
May, 2019
3
July, 2019
2
February, 2020
2
June, 2019
1
January, 2018
Available data
132
bam
110
bigWig
86
bed narrowPeak
70
tsv
25
bigBed narrowPeak
23
fastq
7
bed bed3+
6
tagAlign
4
bed broadPeak
4
bigBed broadPeak
Organism
172
Homo sapiens
Biosample type
74
cell line
73
tissue
23
in vitro differentiated cells
2
primary cell
Organ
865
pancreas
790
liver
665
connective tissue
490
adipose tissue
433
epithelium
387
heart
331
kidney
283
brain
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
172
AMP
Genome assembly (visualization)
153
GRCh38
118
hg19
1
hg18
Lab
172
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
172 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
GRO-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
H1-hESC
8
tissue
coronary artery
1
5
36
2
tibial artery
1
23
1
2
pulmonary artery
2
in vitro differentiated cells
pancreatic endoderm
4
18
1
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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