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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
37
ChIP-seq
11
ATAC-seq
5
DNase-seq
Assay category
54
Transcription
37
DNA binding
16
DNA accessibility
Target of assay
26
histone
26
histone modification
18
broad histone mark
11
transcription factor
8
narrow histone mark
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
64
February, 2021
21
October, 2019
6
January, 2019
4
November, 2018
3
December, 2018
3
July, 2019
3
May, 2019
2
June, 2019
1
October, 2017
Available data
107
bam
99
bigWig
54
tsv
53
bed narrowPeak
38
bigBed narrowPeak
14
fastq
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
4
tagAlign
Organism
107
Homo sapiens
Biosample type
64
cell line
41
tissue
2
primary cell
Organ
624
liver
603
pancreas
575
connective tissue
425
adipose tissue
250
epithelium
183
heart
164
vasculature
162
brain
159
blood vessel
113
kidney
95
limb
93
artery
70
bone element
65
musculature of body
55
blood
55
bodily fluid
34
eye
31
nerve
25
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
107
AMP
Genome assembly (visualization)
144
GRCh38
107
hg19
Lab
107
AMP-T2D consortium
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
107 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
cell line
smooth muscle cell of the coronary artery
52
4
8
tissue
tibial artery
18
1
2
spleen
12
1
1
coronary artery
3
1
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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