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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
47
ChIP-seq
46
ATAC-seq
5
DNase-seq
2
WGBS
2
single cell RNA-seq
1
pCHi-C
Assay category
58
Transcription
51
DNA accessibility
47
DNA binding
2
DNA methylation
Target of assay
26
histone
26
histone modification
18
broad histone mark
13
control
8
narrow histone mark
8
transcription factor
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
26
October, 2019
9
November, 2018
December, 2018
7
January, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
March, 2020
1
October, 2017
Available data
119
bam
98
bigWig
85
bed narrowPeak
59
tsv
35
bigBed narrowPeak
17
fastq
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
159
Homo sapiens
Biosample type
91
tissue
66
cell line
2
primary cell
Organ
865
pancreas
789
liver
665
connective tissue
490
adipose tissue
433
epithelium
387
heart
331
kidney
283
brain
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
75
bone element
61
eye
43
nerve
42
blood
42
bodily fluid
31
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
159
AMP
Genome assembly (visualization)
141
GRCh38
104
hg19
Lab
159
AMP-T2D consortium
audit.ERROR.category!
inconsistent ontology term
month_released!
December, 2018
BIOSAMPLE
ASSAY
159 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
pCHi-C
tissue
coronary artery
1
5
36
2
tibial artery
1
23
1
2
spleen
13
1
1
2
1
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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