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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
8
DNase-seq
7
ATAC-seq
Assay category
49
DNA binding
15
DNA accessibility
Target of assay
27
histone
27
histone modification
22
transcription factor
14
narrow histone mark
12
broad histone mark
9
RNA binding protein
2
chromatin remodeller
Date released
46
August, 2017
5
June, 2019
5
October, 2018
2
August, 2021
2
November, 2020
1
February, 2021
1
February, 2023
1
November, 2018
1
October, 2017
Available data
580
bam
560
bigWig
477
tsv
101
fastq
64
bed narrowPeak
24
bed bed3+
22
tagAlign
18
bigBed narrowPeak
9
bed broadPeak
8
bigBed broadPeak
6
bed bed3
4
bed bedgraph
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
64
Homo sapiens
Biosample type
45
in vitro differentiated cells
12
tissue
7
primary cell
Organ
440
liver
201
brain
200
pancreas
187
heart
171
kidney
vasculature
129
blood vessel
129
epithelium
91
limb
74
artery
64
connective tissue
54
blood
54
bodily fluid
52
musculature of body
33
eye
27
nerve
18
ureter
14
spleen
13
vein
12
adipose tissue
12
embryo
8
bone element
8
skeleton
1
pituitary gland
Project
64
AMP
Genome assembly (visualization)
63
hg19
60
GRCh38
Lab
62
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
Audit category:
6
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
organ_slims!
vasculature
BIOSAMPLE
ASSAY
64 results
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ChIP-seq
DNase-seq
ATAC-seq
in vitro differentiated cells
adipocyte
42
1
1
osteoblast
1
tissue
omental fat pad
3
2
1
subcutaneous adipose tissue
2
1
adipose tissue
1
1
subcutaneous abdominal adipose tissue
1
primary cell
osteoblast
1
2
cardiac fibroblast
2
brain pericyte
1
hepatic stellate cell
1
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