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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
465
total RNA-seq
75
ChIP-seq
7
ATAC-seq
7
DNase-seq
6
WGBS
4
single cell RNA-seq
3
small RNA-seq
2
pCHi-C
1
Hi-C
1
RNA microarray
Assay category
472
Transcription
75
DNA binding
14
DNA accessibility
6
DNA methylation
1
3D chromatin structure
Target of assay
33
histone
33
histone modification
25
control
20
broad histone mark
17
transcription factor
13
narrow histone mark
5
RNA binding protein
Date released
447
February, 2021
57
August, 2017
23
October, 2018
17
July, 2019
6
June, 2019
6
November, 2020
2
April, 2018
2
February, 2020
2
July, 2018
2
October, 2019
1
August, 2021
1
February, 2023
1
January, 2018
March, 2020
1
May, 2021
1
May, 2023
1
November, 2018
1
October, 2017
Available data
521
bam
503
bigWig
471
tsv
46
fastq
19
bed narrowPeak
15
bigBed narrowPeak
13
bed bed3+
8
bed broadPeak
8
tagAlign
7
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
hdf5
Organism
570
Homo sapiens
Biosample type
545
tissue
in vitro differentiated cells
26
primary cell
Organ
853
pancreas
772
liver
571
connective tissue
488
adipose tissue
413
epithelium
379
heart
331
kidney
281
brain
231
vasculature
226
blood vessel
141
artery
121
limb
82
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
8
embryo
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
570
AMP
1
T1D
Genome assembly (visualization)
504
hg19
501
GRCh38
Lab
570
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
Audit category:
12
missing controlled_by
audit.ERROR.category!
inconsistent ontology term
month_released!
March, 2020
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
571 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
small RNA-seq
pCHi-C
Hi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
+ See 3 more…
primary cell
osteoblast
5
2
1
1
pancreatic stellate cell
4
cardiac fibroblast
1
2
brain pericyte
1
1
mesenchymal stem cell of adipose
1
1
+ See 6 more…
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