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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
472
total RNA-seq
142
ChIP-seq
22
ATAC-seq
8
DNase-seq
6
WGBS
4
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
Assay category
22
DNA accessibility
Date released
8
February, 2023
5
February, 2021
3
October, 2019
2
August, 2021
1
August, 2017
1
January, 2018
1
November, 2020
1
October, 2017
Available data
9
bigWig
7
bed narrowPeak
6
bed bed3
4
bam
4
bed bedgraph
4
bigBed narrowPeak
2
bed bed3+
2
fastq
Organism
22
Homo sapiens
Biosample type
15
in vitro differentiated cells
5
tissue
2
primary cell
Organ
133
pancreas
83
epithelium
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
22
connective tissue
22
liver
12
bone element
12
skeleton
8
limb
5
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
22
AMP
Genome assembly (visualization)
22
hg19
4
GRCh38
Lab
20
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
organ_slims!
large intestine
BIOSAMPLE
ASSAY
22 results
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ATAC-seq
in vitro differentiated cells
adipocyte
8
chondrocyte
5
osteoblast
1
preadipocyte
1
tissue
adipose tissue
3
omental fat pad
1
subcutaneous adipose tissue
1
primary cell
osteoblast
2
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