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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
18
DNase-seq
12
total RNA-seq
1
GRO-seq
Assay category
18
DNA accessibility
18
DNA binding
12
Transcription
Target of assay
10
histone
10
histone modification
6
narrow histone mark
5
control
4
broad histone mark
3
transcription factor
Date released
18
June, 2019
13
February, 2018
9
December, 2017
8
August, 2021
1
January, 2018
Available data
48
bam
43
bigWig
30
bed narrowPeak
23
fastq
21
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
18
bigBed narrowPeak
12
tsv
Organism
49
Homo sapiens
Biosample type
23
in vitro differentiated cells
18
tissue
8
cell line
Organ
865
pancreas
790
liver
665
connective tissue
490
adipose tissue
433
epithelium
347
heart
331
kidney
283
brain
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
49
AMP
Genome assembly (visualization)
43
GRCh38
43
hg19
1
hg18
Lab
49
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
DNase-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
4
1
tissue
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
cell line
H1-hESC
8
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