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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ATAC-seq
55
total RNA-seq
47
WGBS
7
Hi-C
5
RRBS
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
63
DNA accessibility
55
Transcription
52
DNA methylation
7
3D chromatin structure
Date released
80
May, 2022
52
February, 2023
19
September, 2020
7
August, 2020
7
July, 2019
6
February, 2021
3
October, 2019
3
October, 2022
1
December, 2019
1
March, 2020
Available data
bam
252
fastq
244
bigWig
129
bed narrowPeak
120
tsv
80
zippedFastqFolder
71
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
20
bed bed3+
7
tagAlign
5
bed bedMethyl
5
bigBed bedMethyl
5
hic
4
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
178
Homo sapiens
Biosample type
163
primary cell
15
tissue
1
cell line
Organ
230
pancreas
207
kidney
179
epithelium
141
heart
110
liver
85
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
42
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
9
bone element
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
Project
152
HPAP
27
AMP
Genome assembly (visualization)
24
hg19
10
GRCh38
Lab
152
Klaus Kaestner, Upenn
27
AMP-T2D consortium
Audit category:
inconsistent ontology term
5
audit script error
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bam
BIOSAMPLE
ASSAY
179 results
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ATAC-seq
total RNA-seq
WGBS
Hi-C
RRBS
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
+ See 8 more…
tissue
pigmented layer of retina
12
2
renal glomerulus
1
cell line
EndoC_BH1
1
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