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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
108
ChIP-seq
6
ATAC-seq
6
WGBS
4
DNase-seq
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
406
Transcription
108
DNA binding
10
DNA accessibility
6
DNA methylation
Target of assay
56
histone
56
histone modification
36
broad histone mark
35
control
20
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
43
October, 2019
23
October, 2018
12
July, 2019
3
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
October, 2017
Available data
483
bam
456
bigWig
406
tsv
44
fastq
39
bed narrowPeak
36
bigBed narrowPeak
8
bed bed3+
8
tagAlign
5
bed broadPeak
4
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
532
Homo sapiens
Biosample type
530
tissue
2
primary cell
1
in vitro differentiated cells
Organ
865
pancreas
790
liver
665
connective tissue
490
adipose tissue
433
epithelium
347
heart
331
kidney
283
brain
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
533
AMP
Genome assembly (visualization)
456
hg19
454
GRCh38
Lab
533
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
12
missing controlled_by
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
533 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
tibial nerve
5
35
1
2
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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