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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
34
DNase-seq
11
total RNA-seq
6
Hi-C
5
RRBS
2
ATAC-seq
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
66
DNA binding
37
DNA accessibility
14
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
50
histone
50
histone modification
32
broad histone mark
18
narrow histone mark
16
control
Date released
42
October, 2019
34
June, 2019
26
August, 2017
10
July, 2019
7
May, 2019
5
March, 2020
3
February, 2020
2
May, 2022
1
January, 2018
Available data
91
bigWig
90
bam
79
bed narrowPeak
65
bigBed narrowPeak
47
bed broadPeak
35
bed bed3+
34
bigBed broadPeak
15
tagAlign
14
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
130
Homo sapiens
Biosample type
124
tissue
6
primary cell
Organ
865
pancreas
790
liver
665
connective tissue
490
adipose tissue
433
epithelium
347
heart
331
kidney
283
brain
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
130
AMP
Genome assembly (visualization)
96
hg19
76
GRCh38
Lab
130
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
130 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
RRBS
ATAC-seq
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
tibial nerve
35
2
5
1
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
12
1
muscle of arm
17
gastrocnemius medialis
1
4
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primary cell
skeletal muscle cell
2
1
1
skeletal muscle satellite cell
1
1
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