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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
5
total RNA-seq
3
DNase-seq
2
ATAC-seq
2
WGBS
1
pCHi-C
Assay category
55
DNA binding
5
DNA accessibility
5
Transcription
2
DNA methylation
Target of assay
30
histone
30
histone modification
20
broad histone mark
19
control
10
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
42
October, 2019
9
November, 2018
7
December, 2018
7
January, 2019
1
February, 2020
1
March, 2020
1
October, 2017
Available data
66
bam
47
bigWig
41
bed narrowPeak
39
bigBed narrowPeak
24
fastq
6
tsv
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
68
Homo sapiens
Biosample type
68
tissue
Organ
865
pancreas
790
liver
665
connective tissue
490
adipose tissue
433
epithelium
347
heart
331
kidney
283
brain
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
68
AMP
Genome assembly (visualization)
47
GRCh38
45
hg19
Lab
68
AMP-T2D consortium
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BIOSAMPLE
ASSAY
68 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
pCHi-C
tissue
tibial nerve
35
5
2
1
spleen
20
1
1
2
1
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