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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
370
total RNA-seq
203
ChIP-seq
133
ATAC-seq
69
single cell RNA-seq
51
WGBS
11
snATAC-seq
8
DNase-seq
8
Hi-C
4
MeRIP-seq
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
370
Transcription
Date released
120
July, 2018
89
August, 2017
42
February, 2023
37
May, 2021
26
September, 2018
19
November, 2019
16
September, 2020
6
April, 2018
6
May, 2022
3
March, 2020
2
July, 2019
2
October, 2018
1
August, 2021
1
February, 2020
Available data
303
bam
299
tsv
297
bigWig
184
fastq
6
txt
Organism
370
Homo sapiens
Biosample type
289
tissue
81
primary cell
Organ
472
connective tissue
398
adipose tissue
370
pancreas
189
liver
97
epithelium
72
heart
62
bone element
61
blood vessel
61
vasculature
57
kidney
56
artery
19
eye
16
brain
12
embryo
7
limb
6
musculature of body
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
310
AMP
53
HPAP
7
T1D
Genome assembly (visualization)
297
GRCh38
297
hg19
Lab
304
AMP-T2D consortium
53
Klaus Kaestner, Upenn
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
370 results
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Clear Filters
total RNA-seq
tissue
islet of Langerhans
284
body of pancreas
3
pancreas
2
primary cell
pancreatic alpha cell
52
pancreatic beta cell
21
pancreatic acinar cell
4
pancreatic ductal cell
4
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