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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
299
total RNA-seq
69
single cell RNA-seq
6
WGBS
2
small RNA-seq
1
ATAC-seq
1
pCHi-C
Assay category
370
Transcription
6
DNA methylation
1
DNA accessibility
Date released
148
July, 2018
89
August, 2017
39
April, 2018
36
May, 2021
26
September, 2018
19
November, 2019
6
February, 2021
4
July, 2019
3
August, 2018
3
March, 2020
2
October, 2018
1
August, 2021
1
February, 2020
1
June, 2018
Available data
635
bam
570
bigWig
466
fastq
378
tsv
200
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bedpe bed3+
6
bigBed bedMethyl
6
hic
6
txt
3
cool
1
bedpe
1
hdf5
Organism
378
Homo sapiens
Biosample type
275
tissue
103
primary cell
Organ
477
connective tissue
401
adipose tissue
378
pancreas
174
liver
168
heart
120
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
25
brain
19
kidney
12
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
thymus
Project
372
AMP
6
HPAP
Genome assembly (visualization)
369
hg19
368
GRCh38
Lab
371
AMP-T2D consortium
6
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
378 results
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total RNA-seq
single cell RNA-seq
WGBS
small RNA-seq
ATAC-seq
pCHi-C
tissue
islet of Langerhans
267
1
body of pancreas
3
2
pancreas
1
1
primary cell
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
11
pancreatic ductal cell
4
10
pancreatic delta cell
11
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