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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
111
total RNA-seq
ATAC-seq
18
snATAC-seq
16
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
154
DNA binding
111
Transcription
18
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
229
May, 2021
41
May, 2020
16
January, 2021
12
February, 2023
6
May, 2022
Available data
211
bigWig
182
bam
114
bed narrowPeak
92
tsv
84
tagAlign
6
fastq
6
txt
2
bed bed3+
Organism
304
Homo sapiens
Biosample type
234
primary cell
42
in vitro differentiated cells
23
tissue
5
cell line
Organ
22
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
220
T1D
84
AMP
Genome assembly (visualization)
211
hg19
176
GRCh38
Lab
3270
AMP-T2D consortium
304
Kyle Gaulton, UCSD
275
Klaus Kaestner, Upenn
67
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
36
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
target.investigated_as!
nucleotide modification
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
304 results
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Clear Filters
ChIP-seq
total RNA-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
peripheral blood mononuclear cell
8
B cell
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 29 more…
in vitro differentiated cells
embryonic stem cell
37
5
tissue
islet of Langerhans
11
6
pancreas
1
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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