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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
729
ChIP-seq
Assay category
729
DNA binding
Target of assay
729
histone modification
728
histone
488
transcription factor
374
narrow histone mark
353
broad histone mark
298
control
98
RNA binding protein
82
recombinant protein
35
chromatin remodeller
5
other context
5
other post-translational modification
2
nucleotide modification
Date released
173
October, 2019
161
August, 2017
89
May, 2019
85
November, 2017
60
April, 2019
30
October, 2018
29
December, 2017
27
May, 2020
21
May, 2021
17
August, 2021
16
February, 2018
12
October, 2017
7
January, 2019
2
March, 2020
Available data
588
bigWig
584
bed narrowPeak
566
bam
344
bigBed narrowPeak
223
tagAlign
155
fastq
49
bed broadPeak
22
bed bed3+
14
bigBed broadPeak
1
tagAlign bed3+
Organism
723
Homo sapiens
Biosample type
591
tissue
primary cell
110
in vitro differentiated cells
26
cell line
2
stem cell
Organ
182
brain
100
liver
81
pancreas
70
connective tissue
60
heart
54
blood vessel
54
vasculature
49
limb
32
adipose tissue
25
musculature of body
24
nerve
20
artery
20
kidney
13
epithelium
10
embryo
6
spleen
4
gonad
4
ovary
2
eye
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
727
AMP
2
T1D
Genome assembly (visualization)
555
GRCh38
538
hg19
Lab
706
AMP-T2D consortium
20
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
Audit category:
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
25
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
biosample_type!
primary cell
BIOSAMPLE
ASSAY
729 results
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Clear Filters
ChIP-seq
tissue
liver
65
islet of Langerhans
51
subcutaneous abdominal adipose tissue
31
heart left ventricle
24
tibial nerve
24
+ See 97 more…
in vitro differentiated cells
adipocyte
37
embryonic stem cell
22
neural progenitor cell
14
hepatocyte
12
pancreatic endoderm
10
+ See 6 more…
cell line
HepG2
18
Panc1
7
GM12878
1
stem cell
hESC
2
See all biosamples
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