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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
141
single cell RNA-seq
47
WGBS
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
342
Transcription
136
DNA accessibility
88
DNA binding
47
DNA methylation
4
3D chromatin structure
Date released
81
February, 2023
74
May, 2022
56
September, 2020
51
May, 2021
47
September, 2023
45
May, 2020
18
February, 2021
9
April, 2020
4
March, 2020
4
March, 2023
Available data
132
fastq
104
tsv
98
bam
98
bigWig
93
zippedFastqFolder
Organism
385
Homo sapiens
Biosample type
320
primary cell
63
tissue
4
cell line
2
stem cell
Organ
109
pancreas
102
epithelium
47
kidney
9
lung
Project
AMP
224
HPAP
105
T1D
47
KPMP
9
LungMap
4
community
Genome assembly (visualization)
98
GRCh38
98
hg19
Lab
224
Klaus Kaestner, Upenn
101
Kyle Gaulton, UCSD
47
KPMP
9
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
6
inconsistent ontology term
audit.ERROR.category!
inconsistent replicate
award.project!
AMP
BIOSAMPLE
ASSAY
389 results
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total RNA-seq
single cell RNA-seq
WGBS
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
pancreatic alpha cell
42
31
monocyte
53
exocrine cell
39
pancreatic beta cell
11
16
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tissue
kidney
47
lung
9
islet of Langerhans
7
cell line
EndoC-BH1
1
1
EndoC_BH1
2
stem cell
SB Ad3.1
1
1
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