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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
WGBS
17
RRBS
DNAme array
Assay category
1547
Transcription
1014
DNA binding
729
DNA accessibility
75
DNA methylation
33
3D chromatin structure
1
DNA sequencing
Date released
41
May, 2022
27
July, 2019
7
August, 2017
Available data
41
zippedFastqFolder
36
bed bedMethyl
36
bigBed bedMethyl
fastq
18
bam
17
bigWig
6
tsv
Organism
75
Homo sapiens
Biosample type
50
primary cell
25
tissue
Organ
47
epithelium
43
pancreas
10
heart
4
connective tissue
4
kidney
4
liver
4
musculature of body
3
adipose tissue
3
vasculature
2
blood vessel
2
brain
1
eye
1
limb
1
pericardium
Project
41
HPAP
34
AMP
Genome assembly (visualization)
15
hg19
8
GRCh38
Lab
41
Klaus Kaestner, Upenn
34
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
audit.ERROR.category!
inconsistent replicate
files.file_type!
fastq
assay_title!
DNAme array
BIOSAMPLE
ASSAY
75 results
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WGBS
RRBS
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 6 more…
tissue
heart left ventricle
4
1
subcutaneous abdominal adipose tissue
3
aorta
2
heart right ventricle
2
liver
2
+ See 10 more…
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