Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1533
total RNA-seq
530
ATAC-seq
356
single cell RNA-seq
212
DNase-seq
85
RNA microarray
75
WGBS
57
pCHi-C
55
snATAC-seq
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
21
DNA methylation
5
DNA accessibility
Date released
17
July, 2019
7
August, 2017
1
November, 2018
1
October, 2019
Available data
19
bed bedMethyl
19
bigBed bedMethyl
6
fastq
5
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
1
tar
Organism
26
Homo sapiens
Biosample type
15
tissue
11
primary cell
Organ
7
epithelium
5
kidney
5
musculature of body
4
pancreas
3
brain
2
heart
2
liver
2
vasculature
1
blood vessel
1
connective tissue
1
eye
1
pericardium
1
vein
Project
26
AMP
Genome assembly (visualization)
24
hg19
Lab
26
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
audit.ERROR.category!
inconsistent replicate
audit script error
BIOSAMPLE
ASSAY
26 results
search-icon
table-tab-icon
Clear Filters
RRBS
FAIRE-seq
tissue
skeletal muscle tissue
4
islet of Langerhans
1
1
kidney
1
1
pancreas
1
1
brain
1
+ See 4 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
+ See 6 more…
See all biosamples
Download