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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1533
total RNA-seq
530
ATAC-seq
356
single cell RNA-seq
212
DNase-seq
85
RNA microarray
75
WGBS
57
pCHi-C
55
snATAC-seq
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
96
DNA methylation
Date released
41
May, 2022
27
July, 2019
15
August, 2017
7
November, 2018
6
February, 2021
Available data
41
zippedFastqFolder
36
bed bedMethyl
36
bigBed bedMethyl
21
fastq
18
bam
17
bigWig
6
tsv
Organism
96
Homo sapiens
Biosample type
57
primary cell
38
tissue
1
cell line
Organ
53
epithelium
53
pancreas
10
heart
7
connective tissue
7
liver
6
adipose tissue
6
musculature of body
4
kidney
3
vasculature
2
blood vessel
2
brain
2
spleen
1
eye
1
limb
1
pericardium
Project
49
AMP
47
HPAP
Genome assembly (visualization)
19
hg19
17
GRCh38
Lab
49
AMP-T2D consortium
47
Klaus Kaestner, Upenn
Audit category:
2
inconsistent ontology term
audit.ERROR.category!
inconsistent replicate
audit script error
BIOSAMPLE
ASSAY
96 results
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WGBS
RRBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 7 more…
tissue
heart left ventricle
4
1
liver
3
1
skeletal muscle tissue
4
adipose tissue
3
pancreas
2
1
+ See 13 more…
cell line
HepG2
1
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