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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1653
ChIP-seq
1516
total RNA-seq
526
ATAC-seq
353
single cell RNA-seq
180
DNase-seq
85
RNA microarray
75
WGBS
55
pCHi-C
55
snATAC-seq
27
Hi-C
19
RRBS
14
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
353
Transcription
Date released
106
August, 2021
48
July, 2018
47
September, 2023
43
April, 2018
40
September, 2020
34
May, 2022
13
February, 2021
9
April, 2020
3
August, 2018
3
June, 2018
3
May, 2023
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
195
tsv
128
fastq
97
bam
97
bigWig
52
zippedFastqFolder
8
txt
3
csv
Organism
353
Homo sapiens
Biosample type
184
primary cell
169
tissue
Organ
93
heart
74
pancreas
70
epithelium
59
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
brain
2
artery
1
liver
1
musculature of body
Project
212
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
97
GRCh38
97
hg19
Lab
201
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
9
inconsistent ontology term
audit script error
audit.ERROR.category!
inconsistent replicate
audit script error
organ_slims!
brain
BIOSAMPLE
ASSAY
353 results
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single cell RNA-seq
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 12 more…
tissue
kidney
59
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
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