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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
696
ChIP-seq
123
total RNA-seq
27
ATAC-seq
11
WGBS
5
GRO-seq
3
RRBS
2
FAIRE-seq
1
DNase-seq
1
Hi-C
1
pCHi-C
Assay category
696
DNA binding
123
Transcription
30
DNA accessibility
14
DNA methylation
1
3D chromatin structure
Target of assay
405
transcription factor
152
control
134
histone modification
133
histone
82
recombinant protein
80
RNA binding protein
71
broad histone mark
61
narrow histone mark
31
chromatin remodeller
4
other context
4
other post-translational modification
Date released
257
November, 2017
222
August, 2017
94
December, 2017
78
November, 2018
58
October, 2018
39
February, 2018
35
December, 2018
30
January, 2019
24
May, 2022
13
October, 2017
6
April, 2018
6
September, 2017
5
January, 2018
2
July, 2018
1
August, 2018
Available data
2782
bam
2556
bigWig
1521
bed narrowPeak
1330
tsv
949
fastq
933
bigBed narrowPeak
298
tagAlign
bed broadPeak
236
bed bed3+
236
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
10
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
869
Homo sapiens
Biosample type
primary cell
369
cell line
357
tissue
140
in vitro differentiated cells
4
stem cell
Organ
404
liver
203
pancreas
96
connective tissue
60
blood
60
bodily fluid
43
adipose tissue
27
embryo
23
spleen
19
epithelium
7
brain
2
musculature of body
Project
870
AMP
Genome assembly (visualization)
704
hg19
658
GRCh38
5
hg18
Lab
846
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
28
inconsistent control
4
inconsistent ontology term
Audit category:
43
missing controlled_by
Audit category:
38
inconsistent control read length
8
inconsistent control run_type
audit.ERROR.category!
inconsistent replicate
biosample_type!
primary cell
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
870 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
GRO-seq
RRBS
FAIRE-seq
DNase-seq
Hi-C
pCHi-C
cell line
HepG2
302
5
1
1
GM12878
60
tissue
islet of Langerhans
28
103
18
1
1
liver
67
1
1
body of pancreas
33
4
2
spleen
20
1
2
pancreas
10
2
1
+ See 8 more…
in vitro differentiated cells
adipocyte
53
pancreatic endoderm
18
4
1
hepatocyte
15
definitive endodermal cell
8
2
1
primitive gut cell
8
2
1
+ See 7 more…
stem cell
hESC
3
1
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