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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
93
single cell RNA-seq
68
total RNA-seq
47
ATAC-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
162
Transcription
129
DNA binding
47
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
18
control
16
transcription factor
10
RNA binding protein
Date released
92
August, 2021
66
February, 2021
57
April, 2019
40
May, 2024
36
February, 2023
21
May, 2019
20
July, 2019
8
October, 2019
7
March, 2020
3
February, 2020
3
May, 2021
Available data
214
bigWig
199
bam
185
bed narrowPeak
164
tsv
88
bigBed narrowPeak
27
bed bed3+
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
353
Homo sapiens
Biosample type
286
tissue
66
cell line
primary cell
1
in vitro differentiated cells
Organ
715
liver
641
connective tissue
579
pancreas
486
adipose tissue
353
heart
250
kidney
229
brain
194
blood vessel
194
vasculature
158
bone element
135
artery
118
epithelium
86
limb
61
blood
61
bodily fluid
53
eye
41
nerve
37
embryo
37
musculature of body
24
spleen
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
353
AMP
Genome assembly (visualization)
229
GRCh38
153
hg19
Lab
313
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
audit.ERROR.category!
inconsistent replicate
biosample_type!
primary cell
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
353 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
2
4
1
1
1
left cardiac atrium
40
18
coronary artery
5
1
36
heart right ventricle
13
17
1
2
1
1
right cardiac atrium
6
18
1
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
in vitro differentiated cells
cardiac fibroblast
1
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