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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
336
ChIP-seq
60
ATAC-seq
30
DNase-seq
1
FAIRE-seq
Assay category
336
DNA binding
91
DNA accessibility
Target of assay
294
histone
294
histone modification
149
broad histone mark
144
narrow histone mark
42
transcription factor
16
RNA binding protein
4
chromatin remodeller
Date released
132
May, 2021
76
August, 2017
47
June, 2019
46
September, 2018
34
December, 2017
28
August, 2021
23
October, 2019
16
February, 2018
6
November, 2017
5
November, 2019
5
September, 2017
4
May, 2019
2
February, 2023
2
November, 2020
1
February, 2021
Available data
900
bam
872
bigWig
550
fastq
427
bed narrowPeak
401
tsv
153
zippedFastqFolder
140
tagAlign
126
bigBed narrowPeak
62
bed bed3+
50
bed broadPeak
50
bigBed broadPeak
11
bedpe bed3+
10
bed bedMethyl
10
bigBed bedMethyl
10
hic
7
bed bedgraph
6
bed bed3
4
hdf5
3
cool
3
txt
2
csv
2
ibed
1
tar
Organism
427
Homo sapiens
Biosample type
984
tissue
403
cell line
295
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
124
epithelium
70
pancreas
62
connective tissue
22
kidney
21
vasculature
20
liver
17
blood vessel
14
embryo
13
vein
11
brain
9
musculature of body
6
heart
3
eye
Project
343
AMP
84
T1D
Genome assembly (visualization)
419
hg19
389
GRCh38
Lab
309
AMP-T2D consortium
114
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
38
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
22
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
inconsistent replicate
BIOSAMPLE
ASSAY
427 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
pancreatic ductal cell
13
4
skeletal muscle myoblast
14
2
pancreatic beta cell
7
7
+ See 29 more…
in vitro differentiated cells
adipocyte
42
1
1
neural progenitor cell
13
10
hepatocyte
14
pancreatic endoderm
12
definitive endodermal cell
6
+ See 13 more…
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