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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1866
ChIP-seq
1508
total RNA-seq
502
ATAC-seq
369
single cell RNA-seq
208
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
53
pCHi-C
34
Hi-C
20
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
4
August, 2021
2
February, 2023
Available data
2
bed bed3+
Organism
6
Homo sapiens
Biosample type
4
cell line
2
in vitro differentiated cells
Organ
2
connective tissue
2
epithelium
2
pancreas
Project
4
AMP
2
T1D
Genome assembly (visualization)
2
hg19
Lab
2
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
audit.ERROR.category!
inconsistent replicate
organ_slims!
eye
BIOSAMPLE
ASSAY
6 results
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Capture-C
HiChIP
cell line
EndoC_BH1
2
2
in vitro differentiated cells
adipocyte
1
osteoblast
1
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