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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1012
total RNA-seq
890
ChIP-seq
224
ATAC-seq
180
single cell RNA-seq
175
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
21
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1208
Transcription
890
DNA binding
431
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
614
histone modification
613
histone
320
narrow histone mark
293
broad histone mark
184
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
229
August, 2021
221
October, 2019
193
May, 2020
160
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
64
February, 2023
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
24
February, 2020
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1889
bam
1755
bigWig
1071
tsv
942
bed narrowPeak
552
bigBed narrowPeak
360
fastq
224
tagAlign
206
bed broadPeak
202
bed bed3+
173
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2689
Homo sapiens
Biosample type
2698
tissue
1083
primary cell
661
cell line
394
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
500
pancreas
487
adipose tissue
361
liver
313
heart
299
kidney
249
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
eye
43
nerve
24
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2601
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1842
GRCh38
1712
hg19
Lab
2347
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent replicate
organ_slims!
eye
month_released!
October, 2017
BIOSAMPLE
ASSAY
2698 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
278
69
66
6
1
7
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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