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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
DNase-seq
29
ChIP-seq
4
ATAC-seq
2
Capture-C
1
pCHi-C
1
snATAC-seq
Assay category
175
DNA accessibility
29
DNA binding
Target of assay
12
transcription factor
10
histone
10
histone modification
7
control
5
broad histone mark
5
narrow histone mark
Date released
159
June, 2019
15
December, 2017
14
August, 2017
7
November, 2018
4
February, 2023
4
October, 2019
2
August, 2021
1
February, 2021
1
May, 2022
Available data
2287
bam
2125
bigWig
1375
bed narrowPeak
1021
tsv
864
bigBed narrowPeak
736
fastq
279
tagAlign
252
bed broadPeak
229
bigBed broadPeak
207
bed bed3+
155
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
15
bedpe bed3+
13
hic
10
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
207
Homo sapiens
Biosample type
178
tissue
primary cell
25
in vitro differentiated cells
3
stem cell
1
cell line
Organ
68
kidney
36
limb
33
musculature of body
pancreas
27
brain
27
heart
19
connective tissue
18
ureter
7
liver
6
adipose tissue
5
blood vessel
5
vasculature
4
artery
3
embryo
3
eye
2
nerve
1
spleen
Project
207
AMP
Genome assembly (visualization)
199
GRCh38
193
hg19
Lab
205
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
Audit category:
10
inconsistent control read length
audit.ERROR.category!
inconsistent replicate
organ_slims!
pancreas
biosample_type!
primary cell
BIOSAMPLE
ASSAY
207 results
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DNase-seq
ChIP-seq
ATAC-seq
Capture-C
pCHi-C
snATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
in vitro differentiated cells
adipocyte
7
1
1
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
+ See 3 more…
stem cell
hESC
3
cell line
HepG2
1
See all biosamples
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