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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
166
total RNA-seq
129
ATAC-seq
113
single cell RNA-seq
56
snATAC-seq
31
DNase-seq
17
pCHi-C
10
RRBS
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
113
Transcription
Target of assay
3
control
Date released
40
September, 2020
33
May, 2022
12
February, 2021
11
July, 2018
10
April, 2018
3
July, 2019
2
June, 2018
1
November, 2018
1
September, 2018
Available data
59
fastq
52
zippedFastqFolder
26
bam
26
bigWig
26
tsv
2
csv
Organism
113
Homo sapiens
Biosample type
174
tissue
113
primary cell
2
in vitro differentiated cells
Organ
pancreas
70
epithelium
4
connective tissue
3
brain
Project
85
HPAP
28
AMP
Genome assembly (visualization)
26
GRCh38
26
hg19
Lab
85
Klaus Kaestner, Upenn
28
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
audit.ERROR.category!
inconsistent replicate
organ_slims!
pancreas
BIOSAMPLE
ASSAY
113 results
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single cell RNA-seq
primary cell
Langerhans cell
85
pancreatic cell
9
mesenchymal cell
6
cerebellar granule cell
2
endothelial cell
2
enteroendocrine cell
2
mast cell
2
pancreatic epsilon cell
2
unclassified exocrine cell
2
Purkinje cell
1
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