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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
Assay category
37
DNA binding
Target of assay
25
transcription factor
22
histone
22
histone modification
13
chromatin remodeller
12
broad histone mark
narrow histone mark
6
RNA binding protein
1
recombinant protein
Date released
16
November, 2017
9
December, 2017
6
August, 2017
5
November, 2018
1
February, 2018
Available data
37
bam
37
bigWig
37
fastq
36
bed narrowPeak
20
bigBed narrowPeak
9
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
6
tagAlign
Organism
37
Homo sapiens
Biosample type
21
cell line
15
in vitro differentiated cells
1
stem cell
Organ
21
liver
6
connective tissue
pancreas
2
embryo
Project
37
AMP
Genome assembly (visualization)
37
hg19
34
GRCh38
Lab
37
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
37
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
audit.ERROR.category!
inconsistent replicate
organ_slims!
pancreas
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
cell line
HepG2
21
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
3
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
stem cell
hESC
1
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