Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
85
ChIP-seq
2
ATAC-seq
Assay category
207
DNA accessibility
85
DNA binding
Target of assay
65
histone
65
histone modification
49
transcription factor
36
broad histone mark
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
57
November, 2017
25
August, 2017
9
November, 2018
9
October, 2019
3
October, 2017
1
March, 2019
1
November, 2020
Available data
2736
bam
2510
bigWig
1469
tsv
1295
bed narrowPeak
1140
fastq
881
bigBed narrowPeak
292
bed broadPeak
270
bigBed broadPeak
239
bed bed3+
196
tagAlign
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
6
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
vcf
Organism
288
Homo sapiens
Biosample type
198
tissue
53
cell line
41
primary cell
in vitro differentiated cells
Organ
78
kidney
57
liver
41
musculature of body
39
brain
36
limb
30
heart
20
epithelium
18
ureter
17
pancreas
15
vasculature
12
blood vessel
8
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
292
AMP
Genome assembly (visualization)
268
hg19
262
GRCh38
Lab
290
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
8
inconsistent control read length
2
inconsistent assembly
audit.ERROR.category!
inconsistent replicate
target.investigated_as!
narrow histone mark
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
292 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
2
kidney
13
muscle of leg
13
+ See 43 more…
cell line
HepG2
52
Panc1
1
primary cell
skeletal muscle myoblast
1
8
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
+ See 18 more…
See all biosamples
Download