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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
single cell RNA-seq
16
total RNA-seq
3
ATAC-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
60
Transcription
3
DNA accessibility
1
3D chromatin structure
Date released
714
February, 2021
411
August, 2017
404
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
41
fastq
19
zippedFastqFolder
3
bigWig
1
hic
Organism
60
Homo sapiens
Biosample type
60
primary cell
2
cell line
2
stem cell
Organ
19
epithelium
19
pancreas
Project
59
HPAP
4
community
1
ITG
Genome assembly (visualization)
4
GRCh38
Lab
59
Klaus Kaestner, Upenn
4
Anna Gloyn, Oxford
1
ITG
audit.ERROR.category!
inconsistent replicate
target.investigated_as!
other context
BIOSAMPLE
ASSAY
64 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
pancreatic beta cell
1
1
chondrocytes
1
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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