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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
Assay category
24
DNA binding
Target of assay
803
histone modification
802
histone
409
narrow histone mark
397
transcription factor
392
broad histone mark
90
RNA binding protein
88
recombinant protein
24
chromatin remodeller
12
control
5
other context
5
other post-translational modification
Date released
13
November, 2017
5
November, 2018
3
August, 2017
3
December, 2017
Available data
24
bam
24
bed narrowPeak
24
bigWig
24
fastq
22
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
24
Homo sapiens
Biosample type
18
cell line
3
in vitro differentiated cells
2
tissue
1
primary cell
Organ
21
liver
10
blood
bodily fluid
2
connective tissue
1
epithelium
Project
24
AMP
Genome assembly (visualization)
26
hg19
24
GRCh38
Lab
24
AMP-T2D consortium
Audit category:
2
inconsistent control
Audit category:
4
missing controlled_by
Audit category:
12
inconsistent control read length
6
inconsistent control run_type
audit.ERROR.category!
inconsistent replicate
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
24 results
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ChIP-seq
cell line
HepG2
18
in vitro differentiated cells
adipocyte
2
hepatocyte
1
tissue
liver
2
primary cell
skeletal muscle myoblast
1
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