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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
4
Hi-C
1
snATAC-seq
Assay category
28
DNA binding
4
3D chromatin structure
1
DNA accessibility
Target of assay
28
transcription factor
3
chromatin remodeller
Date released
27
December, 2017
3
October, 2022
1
December, 2018
1
May, 2022
1
October, 2019
Available data
28
bam
28
bed narrowPeak
28
bigBed narrowPeak
28
bigWig
28
fastq
4
hic
3
bedpe bed3+
3
cool
1
bed bed3+
1
txt
Organism
33
Homo sapiens
Biosample type
28
tissue
4
primary cell
1
cell line
Organ
27
liver
4
epithelium
3
pancreas
1
blood
1
blood vessel
1
bodily fluid
1
musculature of body
1
vasculature
1
vein
Project
30
AMP
3
HPAP
Genome assembly (visualization)
33
hg19
28
GRCh38
Lab
30
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
214
inconsistent ontology term
28
inconsistent control
5
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
Hi-C
snATAC-seq
tissue
liver
27
skeletal muscle tissue
1
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
GM12878
1
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