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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
7
single cell RNA-seq
2
RNA microarray
2
snATAC-seq
1
Hi-C
Assay category
28
DNA binding
7
Transcription
2
DNA accessibility
1
3D chromatin structure
Target of assay
28
transcription factor
3
chromatin remodeller
Date released
27
December, 2017
5
February, 2021
4
December, 2019
1
August, 2022
1
December, 2018
1
May, 2022
1
October, 2019
Available data
28
bam
28
bed narrowPeak
28
bigBed narrowPeak
28
bigWig
28
fastq
9
tsv
6
txt
5
csv
1
bed bed3+
1
hic
Organism
40
Homo sapiens
Biosample type
36
tissue
2
in vitro differentiated cells
1
cell line
1
primary cell
Organ
27
liver
7
kidney
2
epithelium
1
blood
1
blood vessel
1
bodily fluid
1
musculature of body
1
pancreas
1
vasculature
1
vein
Project
40
AMP
Genome assembly (visualization)
30
hg19
28
GRCh38
Lab
40
AMP-T2D consortium
30
Klaus Kaestner, Upenn
Audit category:
340
inconsistent ontology term
28
inconsistent control
12
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
single cell RNA-seq
RNA microarray
snATAC-seq
Hi-C
tissue
liver
27
kidney
5
islet of Langerhans
1
kidney interstitium
1
renal glomerulus
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cell line
GM12878
1
primary cell
endothelial cell of umbilical vein
1
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