Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
5
single cell RNA-seq
2
RNA microarray
2
snATAC-seq
1
Hi-C
Assay category
28
DNA binding
5
Transcription
2
DNA accessibility
1
3D chromatin structure
Target of assay
28
transcription factor
3
chromatin remodeller
Date released
27
December, 2017
5
February, 2021
2
December, 2019
1
August, 2022
1
December, 2018
1
May, 2022
1
October, 2019
Available data
28
bam
28
bed narrowPeak
28
bigBed narrowPeak
28
bigWig
28
fastq
7
tsv
6
txt
5
csv
1
bed bed3+
1
hic
Organism
38
Homo sapiens
Biosample type
36
tissue
in vitro differentiated cells
1
cell line
1
primary cell
Organ
27
liver
7
kidney
2
epithelium
1
blood
1
blood vessel
1
bodily fluid
1
musculature of body
1
pancreas
1
vasculature
1
vein
Project
38
AMP
Genome assembly (visualization)
30
hg19
28
GRCh38
Lab
38
AMP-T2D consortium
30
Klaus Kaestner, Upenn
Audit category:
226
inconsistent ontology term
28
inconsistent control
10
audit script error
1
inconsistent replicate
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
38 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
RNA microarray
snATAC-seq
Hi-C
tissue
liver
27
kidney
5
islet of Langerhans
1
kidney interstitium
1
renal glomerulus
1
+ See 1 more…
cell line
GM12878
1
primary cell
endothelial cell of umbilical vein
1
See all biosamples
Download