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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
snATAC-seq
7
single cell RNA-seq
3
Hi-C
2
RNA microarray
1
ChIP-seq
Assay category
29
DNA accessibility
7
Transcription
3
3D chromatin structure
1
DNA binding
Target of assay
1
chromatin remodeller
1
transcription factor
Date released
32
February, 2021
4
December, 2019
3
October, 2022
1
August, 2022
1
December, 2018
1
May, 2022
October, 2019
Available data
28
fastq
9
tsv
6
txt
5
csv
3
bedpe bed3+
3
cool
3
hic
1
bam
1
bed bed3+
1
bed narrowPeak
1
bigBed narrowPeak
1
bigWig
Organism
42
Homo sapiens
Biosample type
30
primary cell
9
tissue
2
in vitro differentiated cells
1
cell line
Organ
liver
7
kidney
4
epithelium
4
pancreas
1
blood
1
bodily fluid
1
musculature of body
Project
30
HPAP
12
AMP
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
30
Klaus Kaestner, Upenn
12
AMP-T2D consortium
Audit category:
330
inconsistent ontology term
41
audit script error
1
inconsistent control
month_released!
October, 2019
organ_slims!
liver
BIOSAMPLE
ASSAY
42 results
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snATAC-seq
single cell RNA-seq
Hi-C
RNA microarray
ChIP-seq
primary cell
Langerhans cell
27
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
tissue
kidney
5
islet of Langerhans
1
kidney interstitium
1
renal glomerulus
1
skeletal muscle tissue
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cell line
GM12878
1
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