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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
total RNA-seq
ChIP-seq
19
ATAC-seq
6
MeRIP-seq
2
Capture-C
2
pCHi-C
1
Hi-C
1
STARR-seq
Assay category
36
Transcription
19
DNA accessibility
1
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
26
February, 2021
20
May, 2021
6
March, 2020
6
November, 2020
3
August, 2021
3
November, 2019
3
October, 2019
Available data
39
tsv
38
bigWig
37
bam
1
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
67
Homo sapiens
Biosample type
108
in vitro differentiated cells
89
tissue
67
cell line
29
primary cell
1
stem cell
Organ
61
epithelium
61
pancreas
5
kidney
Project
65
AMP
2
T1D
Genome assembly (visualization)
40
hg19
37
GRCh38
Lab
60
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
Audit category:
67
inconsistent ontology term
1
inconsistent replicate
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
67 results
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total RNA-seq
ATAC-seq
MeRIP-seq
Capture-C
pCHi-C
Hi-C
STARR-seq
cell line
EndoC_BH1
33
19
6
2
1
RCC 7860 vector
1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 VHL
1
Synthesized DNA
1
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