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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
total RNA-seq
18
ATAC-seq
6
MeRIP-seq
5
ChIP-seq
2
Capture-C
2
pCHi-C
1
Hi-C
1
STARR-seq
Assay category
36
Transcription
18
DNA accessibility
5
DNA binding
1
3D chromatin structure
Target of assay
8
control
3
nucleotide modification
Date released
26
February, 2021
20
May, 2021
6
March, 2020
6
November, 2020
6
October, 2019
4
November, 2019
3
August, 2021
Available data
62
bam
58
bigWig
39
tsv
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
71
Homo sapiens
Biosample type
100
in vitro differentiated cells
87
tissue
71
cell line
29
primary cell
1
stem cell
Organ
62
epithelium
62
pancreas
8
kidney
Project
69
AMP
2
T1D
Genome assembly (visualization)
39
hg19
36
GRCh38
Lab
64
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
Audit category:
71
inconsistent ontology term
month_released!
December, 2017
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
71 results
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total RNA-seq
ATAC-seq
MeRIP-seq
ChIP-seq
Capture-C
pCHi-C
Hi-C
STARR-seq
cell line
EndoC_BH1
33
18
6
2
2
1
RCC 7860 vector
1
1
1
RCC 7860 HIF1a re-expression
1
1
RCC 7860 HIF2a over-expression
1
1
RCC 7860 VHL
1
Synthesized DNA
1
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