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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
24
ChIP-seq
17
ATAC-seq
6
MeRIP-seq
2
Capture-C
1
Hi-C
1
STARR-seq
Assay category
34
Transcription
24
DNA binding
17
DNA accessibility
1
3D chromatin structure
Target of assay
11
histone
11
histone modification
8
control
8
transcription factor
7
recombinant protein
6
broad histone mark
5
narrow histone mark
3
nucleotide modification
1
RNA binding protein
Date released
26
February, 2021
21
May, 2021
16
November, 2019
13
October, 2019
March, 2020
6
November, 2020
3
August, 2021
Available data
59
bam
53
bigWig
34
tsv
20
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
85
Homo sapiens
Biosample type
108
in vitro differentiated cells
89
tissue
85
cell line
54
primary cell
Organ
71
epithelium
71
pancreas
13
kidney
Project
84
AMP
1
T1D
Genome assembly (visualization)
55
hg19
54
GRCh38
Lab
78
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
Audit category:
85
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
month_released!
March, 2020
BIOSAMPLE
ASSAY
85 results
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total RNA-seq
ChIP-seq
ATAC-seq
MeRIP-seq
Capture-C
Hi-C
STARR-seq
cell line
EndoC_BH1
31
14
17
6
2
1
RCC 7860 HIF1a re-expression
1
4
RCC 7860 HIF2a over-expression
1
3
RCC 7860 vector
1
3
Synthesized DNA
1
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