Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
total RNA-seq
19
ATAC-seq
13
ChIP-seq
6
MeRIP-seq
2
Capture-C
2
pCHi-C
1
Hi-C
1
STARR-seq
Assay category
36
Transcription
19
DNA accessibility
13
DNA binding
1
3D chromatin structure
Target of assay
histone
12
histone modification
8
control
8
transcription factor
7
recombinant protein
6
broad histone mark
6
narrow histone mark
3
nucleotide modification
1
RNA binding protein
Date released
26
February, 2021
20
May, 2021
13
October, 2019
6
March, 2020
6
November, 2019
6
November, 2020
3
August, 2021
Available data
50
bam
46
bigWig
39
tsv
9
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
80
Homo sapiens
Biosample type
113
in vitro differentiated cells
89
tissue
80
cell line
37
primary cell
1
stem cell
Organ
64
epithelium
64
pancreas
15
kidney
Project
78
AMP
2
T1D
Genome assembly (visualization)
48
hg19
45
GRCh38
Lab
73
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
Audit category:
80
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
target.investigated_as!
histone
BIOSAMPLE
ASSAY
80 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
pCHi-C
Hi-C
STARR-seq
cell line
EndoC_BH1
33
19
3
6
2
1
RCC 7860 HIF1a re-expression
1
4
RCC 7860 vector
1
3
1
RCC 7860 HIF2a over-expression
1
3
RCC 7860 VHL
1
Synthesized DNA
1
See all biosamples
Download