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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 128total RNA-seq
  • 84RNA microarray
  • 59ChIP-seq
  • 33ATAC-seq
  • 9pCHi-C
  • 9single cell RNA-seq
  • 6MeRIP-seq
  • 5Hi-C
  • 4DNase-seq
  • 2Capture-C
  • 2RRBS
  • 1STARR-seq
Assay category
  • 137Transcription
  • 59DNA binding
  • 37DNA accessibility
  • 53D chromatin structure
  • 2DNA methylation
Target of assay
  • 33histone
  • 33histone modification
  • 19narrow histone mark
  • 15control
  • 14broad histone mark
  • 14transcription factor
  • 7recombinant protein
  • 4RNA binding protein
  • 3nucleotide modification
Date released
  • 128February, 2021
  • 90May, 2021
  • 26June, 2019
  • 23October, 2019
  • 22November, 2019
  • 17March, 2020
  • 8May, 2020
  • 6July, 2018
  • 6November, 2020
  • 4December, 2017
  • 3August, 2021
  • 3May, 2019
  • 2December, 2019
  • 2July, 2019
  • 1February, 2020
  • 1June, 2018
Available data
  • 212bam
  • 191bigWig
  • 144tsv
  • 84txt
  • 62bed narrowPeak
  • 24bigBed narrowPeak
  • 11fastq
  • 7bedpe bed3+
  • 5hic
  • 4bed bed3+
  • 4bed broadPeak
  • 4bigBed broadPeak
  • 3tagAlign
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 2ibed
Organism
  • 342Homo sapiens
Biosample type
  • 110in vitro differentiated cells
  • 92cell line
  • 91tissue
  • 48primary cell
  • 1stem cell
Organ
  • 91epithelium
  • 84bone element
  • 81pancreas
  • 23kidney
  • 15connective tissue
  • 9musculature of body
  • 6embryo
  • 6heart
  • 3brain
  • 1adipose tissue
  • 1limb
  • 1liver
  • 1stomach
  • 1urinary bladder
  • 1vasculature
Project
  • 333AMP
  • 9T1D
Genome assembly (visualization)
  • 211hg19
  • 196GRCh38
Lab
  • 330AMP-T2D consortium
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 5Kyle Gaulton, UCSD
  • 1Bing Ren, UCSD
Audit category:
  • 342inconsistent ontology term
  • 42audit script error
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 1inconsistent control read length
BIOSAMPLE
ASSAY

342 results

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Clear Filters
total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
pCHi-C
single cell RNA-seq
MeRIP-seq
Hi-C
DNase-seq
Capture-C
RRBS
STARR-seq
in vitro differentiated cells
cardiomyocytes593
cardiac precursors (cardiac muscle cell)1911
cardiomyocytes (cardiac muscle cell)31222
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
Hepatic endoderm4
cell line
EndoC_BH1331519612
RCC 7860 HIF1a re-expression14
RCC 7860 vector131
RCC 7860 HIF2a over-expression13
RCC 7860 VHL1
tissue
bone element84
adipose tissue(adipose white tissue)1
bladder (urinary bladder)1
brodmann area 431
cerebellum (Hemisphere)1
primary cell
skeletal muscle satellite cell8
mesenchymal stem cell7
cardiac fibroblast411
epithelial cell of proximal tubule311
naive B cel221
stem cell
mesenchymal stem cell1
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