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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ATAC-seq
29
snATAC-seq
4
DNase-seq
Assay category
144
Transcription
75
DNA accessibility
59
DNA binding
9
3D chromatin structure
2
DNA methylation
Date released
27
February, 2021
16
May, 2021
9
February, 2023
7
November, 2019
4
June, 2019
4
May, 2020
4
October, 2019
2
March, 2020
1
August, 2022
1
May, 2022
Available data
27
fastq
19
bam
16
bed narrowPeak
11
bigWig
7
bed bed3+
7
tsv
4
bed broadPeak
4
bigBed broadPeak
4
bigBed narrowPeak
2
txt
1
bed bedgraph
Organism
75
Homo sapiens
Biosample type
42
primary cell
19
cell line
10
in vitro differentiated cells
4
tissue
Organ
21
epithelium
20
pancreas
4
connective tissue
2
musculature of body
1
adipose tissue
1
heart
1
kidney
1
limb
1
liver
1
vasculature
Project
48
AMP
27
HPAP
Genome assembly (visualization)
25
hg19
15
GRCh38
Lab
47
AMP-T2D consortium
27
Klaus Kaestner, Upenn
1
Struan F.A. Grant, CHOP
Audit category:
46
inconsistent ontology term
29
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
75 results
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ATAC-seq
snATAC-seq
DNase-seq
primary cell
Langerhans cell
27
gabaergic neuron
3
microglial cell/astrocyte
3
central memory CD8-positive, alpha-beta T cell
2
naive B cel
2
+ See 5 more…
cell line
EndoC_BH1
19
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
immature adipocyte
2
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
neuron cell of Hypothalamus (neuron)
1
tissue
adipose tissue(adipose white tissue)
1
islet of Langerhans
1
muscle of leg
1
skeletal muscle tissue
1
See all biosamples
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