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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
total RNA-seq
84
RNA microarray
59
ChIP-seq
42
ATAC-seq
9
pCHi-C
9
single cell RNA-seq
6
MeRIP-seq
5
Hi-C
4
DNase-seq
2
Capture-C
2
RRBS
1
STARR-seq
Assay category
42
DNA accessibility
9
Transcription
Date released
16
May, 2021
9
February, 2023
7
November, 2019
6
July, 2018
4
May, 2020
4
October, 2019
2
December, 2019
2
March, 2020
1
June, 2018
Available data
22
bam
16
tsv
14
bigWig
12
bed narrowPeak
7
fastq
2
bed bed3+
1
bed bedgraph
1
txt
Organism
51
Homo sapiens
Biosample type
19
cell line
19
primary cell
12
in vitro differentiated cells
1
tissue
Organ
24
pancreas
21
epithelium
3
connective tissue
1
adipose tissue
1
liver
Project
51
AMP
Genome assembly (visualization)
27
hg19
18
GRCh38
Lab
50
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Audit category:
51
inconsistent ontology term
7
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
51 results
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ATAC-seq
single cell RNA-seq
cell line
EndoC_BH1
19
primary cell
gabaergic neuron
3
microglial cell/astrocyte
3
central memory CD8-positive, alpha-beta T cell
2
co-expressing pancreatic endocrine cell
2
naive B cel
2
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in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
cardiomyocytes (cardiac muscle cell)
1
2
immature adipocyte
2
cardiac precursors (cardiac muscle cell)
1
neuron cell of Hypothalamus (neuron)
1
tissue
adipose tissue(adipose white tissue)
1
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