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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
total RNA-seq
84
RNA microarray
59
ChIP-seq
42
ATAC-seq
9
pCHi-C
9
single cell RNA-seq
6
MeRIP-seq
5
Hi-C
4
DNase-seq
2
Capture-C
2
RRBS
1
STARR-seq
Assay category
5
3D chromatin structure
Date released
10
March, 2020
2
October, 2019
1
May, 2021
1
November, 2019
Available data
7
bedpe bed3+
6
tsv
5
hic
2
ibed
Organism
14
Homo sapiens
Biosample type
7
in vitro differentiated cells
3
cell line
2
tissue
1
primary cell
1
stem cell
Organ
2
kidney
1
connective tissue
1
epithelium
1
pancreas
1
stomach
1
urinary bladder
Project
13
AMP
1
T1D
Genome assembly (visualization)
7
hg19
Lab
13
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
14
inconsistent ontology term
4
audit script error
BIOSAMPLE
ASSAY
14 results
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pCHi-C
Hi-C
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
2
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
cell line
EndoC_BH1
1
RCC 7860 VHL
1
RCC 7860 vector
1
tissue
bladder (urinary bladder)
1
gastric (mucosa of stomach)
1
primary cell
naive B cel
1
stem cell
mesenchymal stem cell
1
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