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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
total RNA-seq
84
RNA microarray
59
ChIP-seq
42
ATAC-seq
9
pCHi-C
9
single cell RNA-seq
6
MeRIP-seq
5
Hi-C
4
DNase-seq
2
Capture-C
2
RRBS
1
STARR-seq
Assay category
4
DNA accessibility
Date released
8
March, 2020
4
June, 2019
1
May, 2021
Available data
6
tsv
4
bam
4
bed bed3+
4
bed broadPeak
4
bed narrowPeak
4
bigBed broadPeak
4
bigBed narrowPeak
4
bigWig
2
bedpe bed3+
2
ibed
Organism
13
Homo sapiens
Biosample type
4
primary cell
3
in vitro differentiated cells
3
tissue
2
cell line
1
stem cell
Organ
3
kidney
2
connective tissue
1
epithelium
1
heart
1
limb
1
musculature of body
1
stomach
1
urinary bladder
1
vasculature
Project
12
AMP
1
T1D
Genome assembly (visualization)
6
hg19
4
GRCh38
Lab
12
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
13
inconsistent ontology term
BIOSAMPLE
ASSAY
13 results
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pCHi-C
DNase-seq
primary cell
cardiac fibroblast
1
epithelial cell of proximal tubule
1
naive B cel
1
smooth muscle cell of the brain vasculature
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
lymphocyte of B lineage (iPSC)
1
tissue
bladder (urinary bladder)
1
gastric (mucosa of stomach)
1
muscle of leg
1
cell line
RCC 7860 VHL
1
RCC 7860 vector
1
stem cell
mesenchymal stem cell
1
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