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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
87
total RNA-seq
ATAC-seq
5
ChIP-seq
4
Hi-C
2
pCHi-C
Assay category
87
Transcription
5
DNA binding
4
3D chromatin structure
Target of assay
3
transcription factor
2
histone
2
histone modification
2
narrow histone mark
Date released
68
May, 2021
18
February, 2021
6
March, 2020
4
October, 2019
2
December, 2017
Available data
92
bam
92
bigWig
87
tsv
6
bedpe bed3+
5
bed narrowPeak
4
hic
3
tagAlign
2
fastq
2
ibed
Organism
98
Homo sapiens
Biosample type
98
in vitro differentiated cells
57
cell line
36
primary cell
3
tissue
Organ
4
embryo
3
epithelium
Project
98
AMP
Genome assembly (visualization)
98
hg19
92
GRCh38
Lab
98
AMP-T2D consortium
Audit category:
98
inconsistent ontology term
Audit category:
1
inconsistent control read length
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
98 results
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total RNA-seq
ChIP-seq
Hi-C
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
3
cardiac precursors (cardiac muscle cell)
19
1
cardiomyocytes (cardiac muscle cell)
3
2
1
lymphocyte of B lineage (iPSC)
1
1
1
Hepatic endoderm
2
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