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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
47
ChIP-seq
19
ATAC-seq
7
single cell RNA-seq
5
Hi-C
4
DNase-seq
2
RRBS
2
pCHi-C
Assay category
19
DNA accessibility
Date released
6
November, 2019
4
May, 2020
4
October, 2019
3
February, 2023
2
March, 2020
Available data
14
bam
11
bed narrowPeak
7
bigWig
2
bed bed3+
1
bed bedgraph
1
tsv
1
txt
Organism
19
Homo sapiens
Biosample type
10
in vitro differentiated cells
6
primary cell
3
cell line
Organ
4
epithelium
3
connective tissue
3
pancreas
adipose tissue
1
liver
Project
19
AMP
Genome assembly (visualization)
19
hg19
10
GRCh38
Lab
18
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Audit category:
19
inconsistent ontology term
1
inconsistent replicate
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
19 results
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ATAC-seq
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
immature adipocyte
2
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
neuron cell of Hypothalamus (neuron)
1
primary cell
central memory CD8-positive, alpha-beta T cell
2
naive B cel
2
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
cell line
EndoC_BH1
3
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