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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
total RNA-seq
20
ChIP-seq
3
ATAC-seq
1
Hi-C
Assay category
36
Transcription
20
DNA binding
3
DNA accessibility
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
8
transcription factor
7
recombinant protein
6
broad histone mark
6
narrow histone mark
1
RNA binding protein
Date released
26
February, 2021
14
November, 2019
10
October, 2019
5
March, 2020
5
May, 2021
Available data
58
bigWig
57
bam
37
tsv
21
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
60
Homo sapiens
Biosample type
108
in vitro differentiated cells
60
cell line
42
primary cell
4
tissue
Organ
50
epithelium
50
pancreas
10
kidney
Project
56
AMP
4
T1D
Genome assembly (visualization)
60
hg19
57
GRCh38
Lab
60
AMP-T2D consortium
Audit category:
60
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
BIOSAMPLE
ASSAY
60 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
cell line
EndoC_BH1
33
13
3
1
RCC 7860 HIF1a re-expression
1
3
RCC 7860 HIF2a over-expression
1
2
RCC 7860 vector
1
2
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